NUMBA_FUNCTIONS.PY 2.1KB

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354
  1. # ##### BEGIN GPL LICENSE BLOCK #####
  2. #
  3. # This program is free software; you can redistribute it and/or
  4. # modify it under the terms of the GNU General Public License
  5. # as published by the Free Software Foundation; either version 2
  6. # of the License, or (at your option) any later version.
  7. #
  8. # This program is distributed in the hope that it will be useful,
  9. # but WITHOUT ANY WARRANTY; without even the implied warranty of
  10. # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
  11. # GNU General Public License for more details.
  12. #
  13. # You should have received a copy of the GNU General Public License
  14. # along with this program; if not, write to the Free Software Foundation,
  15. # Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
  16. #
  17. # ##### END GPL LICENSE BLOCK #####
  18. import numpy as np
  19. try:
  20. from numba import jit
  21. print("Tissue: Numba module loaded succesfully")
  22. @jit
  23. def numba_reaction_diffusion(n_verts, n_edges, edge_verts, a, b, diff_a, diff_b, f, k, dt, time_steps):
  24. arr = np.arange(n_edges)*2
  25. id0 = edge_verts[arr] # first vertex indices for each edge
  26. id1 = edge_verts[arr+1] # second vertex indices for each edge
  27. for i in range(time_steps):
  28. lap_a = np.zeros(n_verts)
  29. lap_b = np.zeros(n_verts)
  30. lap_a0 = a[id1] - a[id0] # laplacian increment for first vertex of each edge
  31. lap_b0 = b[id1] - b[id0] # laplacian increment for first vertex of each edge
  32. for i, j, la0, lb0 in zip(id0,id1,lap_a0,lap_b0):
  33. lap_a[i] += la0
  34. lap_b[i] += lb0
  35. lap_a[j] -= la0
  36. lap_b[j] -= lb0
  37. ab2 = a*b**2
  38. #a += eval("(diff_a*lap_a - ab2 + f*(1-a))*dt")
  39. #b += eval("(diff_b*lap_b + ab2 - (k+f)*b)*dt")
  40. a += (diff_a*lap_a - ab2 + f*(1-a))*dt
  41. b += (diff_b*lap_b + ab2 - (k+f)*b)*dt
  42. return a, b
  43. @jit
  44. def numba_lerp2(v00, v10, v01, v11, vx, vy):
  45. co0 = v00 + (v10 - v00) * vx
  46. co1 = v01 + (v11 - v01) * vx
  47. co2 = co0 + (co1 - co0) * vy
  48. return co2
  49. except:
  50. print("Tissue: Numba not installed")
  51. pass